Formation metabarcoding PTF OMIC MIO

Welcome on the R training provided by OMICS platform and MIO

Schedule

• DAY1 :
  • Rstudio environment and R language course
  • Practical 1: R basics: Vectors, Tables, dataframe, manipulations, descriptive statistics, Rmarkdown
  • Introduction to VS Code and SSH connection to a remote server (this tutorial)
• DAY2
  • Lecture about metabacoding
  • Training : Data Pre-processing
  • Training : Taxonomic classification
• DAY3
  • Lecture about alpha diversity
  • Training : α diversity anlaysis, statistics and data display
• DAY4
  • Lecture about β diversité
  • Training : β diversité – Ordinations, différential abundance
  • Discussions / Questions

Useful link

Link to sing in IFB cloud and to use our virtual machine.

For short reads with dada2 and exhaustive beta diversity analysis, we recommend to use the ANF 2025 which is free and user friendly.